We conducted a comprehensive analysis of the phylogenetic, phylogeographic, and demographic relationships of Caspian cobra (Naja oxiana; Eichwald, 1831) populations based on a concatenated dataset of two mtDNA genes (cyt b and ND4) across the species’ range in Iran, Afghanistan, and Turkmenistan, along with other members of Asian cobras (i.e. subgenus Naja Laurenti, 1768). Our results provided strong support that N. oxiana is monophyletic and its divergence from its sister taxon, N. kaouthia, during early Pleistocene. Our results also highlight the existence of only one major evolutionary lineage in the Trans-Caspian region, suggesting a rapid expansion of the Caspian cobra from eastern to western Asia, coupled with a rapid range expansion from east of Iran to the northeast. However, the subdivision of eastern and northeastern populations in Iran was not supported; hence we propose only one evolutionary significant unit across the Iranian range of N. oxiana to be considered for conservation efforts.