Studies of populations oscillating through time have a long history in ecology as these dynamics can help provide insights into the causes of population regulation. A particularly difficult challenge is determining the relative role of deterministic versus stochastic forces in producing this oscillatory behavior. Another classic ecological study area is the study of spatial synchrony which also has helped unravel underlying population dynamic principles. One possible approach to understanding the causes of population cycles is based on the idea that a focus on spatiotemporal behavior, oscillations in coupled populations, can provide much further insight into the relative role of deterministic versus stochastic forces. Using ideas based on concepts from statistical physics, we develop results showing that in a system with coupling between adjacent populations, a study of spatial synchrony provides much information about the underlying causes of oscillations. Novel, to ecology, measures of spatial synchrony are a key step.

Foraging by consumers acts as a biotic filtering mechanism for biodiversity at the trophic level of resources. Variation in foraging behaviour have cascading effects on abundance, diversity, and functional trait composition of the community of resource species. Here we propose diversity at giving-up density (DivGUD), when foragers quit exploring a patch, as a novel concept and simple measure to quantify these effects at multiple spatial scales. In experimental landscapes, patch residency of wild rodents decreased local α-DivGUD (via elevated mortality of species with large seeds) and regional γ-DivGUD, while dissimilarity among patches in a landscape (ß-DivGUD) increased. Thus, DivGUD provides a framework linking theories of adaptive foraging behaviour with community ecology allowing to investigate cascading indirect predation effects across multiple trophic levels e.g. the ecology-of-fear framework; feedbacks between functional trait composition of resource species and consumer communities; and effects of inter-individual differences among foragers on the biodiversity of resource communities.

Emerging infectious diseases have resulted in severe population declines across diverse taxa. In some instances, despite attributes associated with high extinction risk, disease emergence and host declines are followed by host stabilization for reasons that are frequently unclear. While host, pathogen, and the environment are recognized as important factors that interact to determine host-pathogen coexistence, they are often considered independently. Here, we use a translocation experiment to disentangle the role of host traits and environmental conditions in driving the persistence of remnant populations a decade after they declined 70-99% and subsequently stabilized with disease. While survival was significantly higher than during the initial epidemic within all sites, protection from severe disease only existed within a narrow environmental space, suggesting host traits conducive to surviving disease are highly environmentally dependent. Ultimately, population persistence following pathogen invasion is the product of host-pathogen interactions that vary across a patchwork of environments.

Chen et al. (2021) concluded that plant input governs topsoil carbon persistence in alpine grasslands. We demonstrated that the excluded direct effect of precipitation on topsoil Δ14C in their analysis was in fact significant and strong. Our results provide an alternative viewpoint on the drivers of soil carbon turnover.

While the impact of biodiversity, notably functional diversity, on ecosystem productivity has been extensively studied, little is known about the effect of individual species. Here, we identified species of high importance for productivity (key species) in over 28,000 diverse grassland communities in the European Alps, and compared their effects with those of community-level measures of functional composition (weighted means, variances, skewness, and kurtosis). After accounting for the environment, the five most important key species jointly explained more deviance than all statistics of functional composition. Key species were generally tall with high specific leaf areas. By dividing the observations according to distinct habitats, the explanatory power of all non-environmental predictors increased considerably, and the relationships between functional composition and productivity varied systematically, presumably because of changing interactions and trade-offs between traits. Our results advocate for a better consideration of species’ individual effects on ecosystem functioning in complement to community-level measures.

Ecological theory suggests that predators should keep prey populations healthy by reducing parasite burdens. However, empirical studies show that predators often have minimal effects on, or even increase, parasitism in prey. To quantify the overall magnitude and direction of the effect of predation on parasitism in prey, we conducted a meta-analysis of 50 empirical studies. We also examined how key attributes of these studies, including parasite type, study design, and predator interaction type (consumptive vs. non-consumptive) contributed to variation in the predator-prey-parasite interaction. We found that the overall effect of predation on parasitism differed between parasites and parasitoids and that predator interaction type, and whether a predator was a non-host spreader of parasites were the most important traits predicting the parasite response. Our results suggest that the mechanistic basis of predator-prey interactions strongly influences the effects of predators on parasites and that these effects, while context dependent, are predictable.

Steady increases in human population size and resource consumption levels are driving rampant agricultural expansion and intensification in some of the world's most pristine ecosystems. Habitat loss caused by agriculture puts the integrity of ecosystems at risk, and as a consequence, threatens the persistence of human societies that rely on ecosystem services to produce resources. Here we develop a spatially explicit model describing the coupled dynamics of an agricultural landscape and human population size to study the effect of different land-use management strategies, defined by the levels of agricultural clustering and intensification, on the sustainability of the social-ecological system. We show how gradual agricultural expansion can cause natural habitat to undergo a percolation transition leading to abrupt habitat fragmentation that feedbacks on human's decision making, causing faster agricultural expansion and aggravating habitat loss and fragmentation. We found that agricultural intensification to spare land from conversion is a successful strategy only in highly natural landscapes and that clustering agricultural land is the most effective measure to preserve landscape connectivity and avoid severe fragmentation. Our work highlights the importance of preserving large connected natural fragments in agricultural landscapes to enhance sustainability.

Carotenoids are important pigments producing integument coloration; however, their dietary availability may be limited in some environments. Many species produce red to yellow hues using a combination of carotenoids and self-synthesised pteridine pigments. A compelling but untested hypothesis is that pteridines replace carotenoids in environments where carotenoid availability is limited. Based on a phylogenetic comparative analysis of pigment concentrations in agamid lizards, we show that environmental gradients predict the ratio of carotenoids to pteridines; carotenoid concentrations are lower and pteridine concentrations higher in arid environments with low vegetation productivity. Both carotenoid and pteridine pigments were present in all species, but only pteridine concentrations explained colour variation among species and there were no correlations between carotenoid and pteridine pigments with similar hue. These results suggest that pteridine pigments replace carotenoids in carotenoid-limited environments, irrespective of skin hue, presumably because it is metabolically cheaper to synthesise pteridines than to acquire and sequester carotenoids when carotenoids are rare.

Predicting which ecological factors constrain species distributions is a fundamental question in ecology and critical to forecasting geographic responses to global change. Darwin hypothesized that abiotic factors generally impose species’ high-latitude and high-elevation (typically cool) range limits, whereas biotic interactions more often impose species’ low-latitude/low-elevation (typically warm) limits, but empirical support has been mixed. Here, we clarify three predictions arising from Darwin’s hypothesis, and show that previously mixed support is partially due to researchers testing different predictions. Using a comprehensive literature review (886 range limits), we find that biotic interactions, including competition, predation, and parasitism, influenced species’ warm limits more often than species’ cool limits. At cool limits, abiotic factors were consistently more important than biotic interactions, but temperature contributed strongly to cool and warm limits. Our results suggest that most range limits will be sensitive to climate warming, but warm limit responses will depend strongly on biotic interactions.

Community composition is a primary determinant of how biodiversity change influences ecosystem functioning and, therefore, the relationship between biodiversity and ecosystem functioning (BEF). We examine the consequences of community composition across six structurally realistic plant community models. We find that a positive correlation between species’ functioning in monoculture vs. their dominance in mixture with regards to a specific function (the “function-dominance correlation”) generates a positive relationship between realized diversity and ecosystem functioning across species richness treatments. However, because realised diversity declines when few species dominate, a positive function-dominance correlation generates a negative relationship between realized diversity and ecosystem functioning within species richness treatments. Removing seed inflow strengthens the link between the function-dominance correlation and BEF relationships across species richness treatments but weakens it within them. These results suggest that changes in species’ identities in a local species pool may more strongly affect ecosystem functioning than changes in species richness.

Niche theory predicts specialists will be more sensitive to environmental perturbation compared to generalists, a hypothesis receiving broad support in free-living species. Based on their niche breadth, parasites can also be classified as specialists and generalists, with specialists infecting only a few and generalists a diverse array of host species. Here, using avian haemosporidian parasites infecting wild bird populations inhabiting the Western Ghats, India as a model system, we elucidate how climate, habitat and human disturbance affects parasite prevalence both directly and indirectly via their effects on host diversity. Our data demonstrates that anthropogenic disturbance acts to reduce the prevalence of specialist parasite lineages, while increasing that of generalist lineages. Thus, as in free-living species, disturbance favors parasite communities dominated by generalist vs. specialist species. Because generalist parasites are more likely to cause emerging infectious diseases, such biotic homogenization of parasite communities could increase disease emergence risk in the Anthropocene

Amphibian skin secretions (substances produced by the amphibian plus microbiota) plausibly act as a first line of defense against pathogen attack, but may also provide chemical cues for pathogens. To clarify the role of skin secretions in host-parasite interactions, we conducted experiments using cane toads (Rhinella marina) and their lungworms (Rhabdias pseudosphaerocephala) from the range-core and invasion-front of the introduced anurans’ range in Australia. Depending on the geographic area, toad skin secretions can reduce the longevity and infection success of parasite larvae, or attract lungworm larvae and enhance their infection success. These striking differences between the two regions were due both to differential responses of the larvae, and differential effects of the skin secretions. Our data suggest that skin secretions play an important role in host-parasite interactions in anurans, and that the arms race between a host and parasite can rapidly generate spatial variation in critical features of that interaction.

Peer-review and subject-matter editing is the backbone of scientific publishing. However, early career researchers (ECRs) are given few opportunities to participate in the editorial process beyond reviewing articles. Thus, a disconnect exists: science needs high-quality editorial talent to conduct, oversee, and improve the publishing process, yet we dedicate few resources to building editorial talent nor giving ECRs formal opportunities to influence the publishing landscape from within. Here, we describe a “two-way” fellowship model that gives ECRs a “seat” at the editorial table of a field-leading journal. We describe both the necessary framework and benefits that can stem from editorial fellowships for ECRs, editors, journals, and the scientific community.

In the western United States, the population of migratory monarch butterflies is on the brink of collapse, having dropped from several million butterflies at coastal overwintering sites in the 1980’s to about 2000 butterflies in the winter of 2020-21. At the same time, a resident (non-migratory) monarch butterfly population in urban gardens seems to be expanding northward. If anything, this urban population has been growing in recent years. We explore the meaning of these changes. The new resident population is not sufficient to make up for the loss of the migratory population; there are still orders of magnitude fewer butterflies now than in the recent past. The resident population also probably lacks the demographic capacity to expand its range inland during summer months, due to higher levels of infection by a protozoan parasite, and subsequently lower survival and fecundity. Nonetheless, the resident population may have the capacity to persist. This sudden change emphasizes the extent to which environmental change can have unexpected consequences. It also demonstrates how quickly these changes can happen. We hope it will provoke discussion about how we define resilience and viability in changing environments.

Paz-Vinas et al. (2021) comment on methodological and data-related limits of our paper (Millette et al. 2020), which affect a small proportion of our datasets and analyses. These points do not refute our conclusions. We address their comments and support the call for the development of best practices for future macrogenetics research.

Ecological processes often exhibit time lags. For plant invasions, lags of decades to centuries between species’ introduction and establishment in the wild (naturalisation) are common, leading to the idea of an invasion debt: accelerating rates of introduction result in an expanding pool of introduced species that will naturalise in the future. Here, I show how a concept from survival analysis, the hazard function, provides an intuitive way to understand and forecast time lags. For plant naturalisation, theoretical arguments predict that lags between introduction and naturalisation will have a unimodal distribution, and that increasing horticultural activity will cause the mean and variance of lag times to decline over time. These predictions were supported by data on introduction and naturalisation dates for plant species introduced to Britain. While increasing trade and horticultural activity can generate an invasion debt by accelerating introductions, the same processes could lower that debt by reducing lag times.

Disturbances often disproportionately impact different vegetation layers in forests and other vertically-stratified ecosystems, shaping community structure and ecosystem function. However, disturbance-driven changes may be mediated by environmental conditions that affect habitat quality and species interactions. In a decade-long field experiment, we tested how kelp forest net primary productivity (NPP) responds to repeated canopy loss along a gradient in grazing and substrate suitability. We discovered that habitat quality can mediate the effects of intensified disturbance on canopy and understory NPP. Experimental annual and quarterly disturbances suppressed total macroalgal NPP, but effects were strongest in high-quality habitats that supported dense kelp canopies that were removed by disturbance. Understory macroalgae partly compensated for canopy NPP losses and this effect magnified with increasing habitat quality. Disturbance-driven increases in understory NPP were still rising after 5–10 years of disturbance, demonstrating the value of long-term experimentation for understanding ecosystem responses to changing disturbance regimes.

Ecological theory recognizes the importance of the variety of species for maintaining the functioning of ecosystems and their derived services. We assert that when studying the effects of shifts in biodiversity levels using mathematical models, their dynamics must be sensitive to the variety of species traits but not to raw species numbers, a property that we call scale--invariance. We present a testing procedure for verifying scale--invariance of ecological network models ---with or without trait adaptation--- expressed as ODEs. Furthermore, we applied our test to several influential models used for evaluating biodiversity effects on ecosystem functioning. In most of the surveyed studies the equations failed our test. This raises doubts about the validity of previous results and calls for revisiting the theory derived from these studies. Our results foster the creation of artifact--free models, a necessary step towards building a more robust theory of biodiversity--driven ecosystem functioning.