References
Ang, L.-H., Chattopadhyay, S., Wei, N., Oyama, T., Okada, K., Batschauer, A., & Deng, X.-W. (1998). Molecular interaction between COP1 and HY5 defines a regulatory switch for light control ofArabidopsis development. Molecular Cell, 1 (2), 213-222.
Cheng, X. F., & Wang, Z. Y. (2005). Overexpression of COL9, a CONSTANS‐LIKE gene, delays flowering by reducing expression of CO and FT in Arabidopsis thaliana . The Plant Journal, 43 (5), 758-768.
Clough, S. J., & Bent, A. F. (1998). Floral dip: a simplified method for Agrobacterium‐mediated transformation of Arabidopsis thaliana . The Plant Journal, 16 (6), 735-743.
Crocco, C. D., Holm, M., Yanovsky, M. J., & Botto, J. F. (2010). AtBBX21 and COP1 genetically interact in the regulation of shade avoidance. The Plant Journal, 64 (4), 551-562.
Crocco, C. D., Locascio, A., Escudero, C. M., Alabadí, D., Blázquez, M. A., & Botto, J. F. (2015). The transcriptional regulator BBX24 impairs DELLA activity to promote shade avoidance in Arabidopsis thaliana . Nature Communications, 6 , 6202.
Datta, S., Hettiarachchi, G., Deng, X.-W., & Holm, M. (2006).Arabidopsis CONSTANS-LIKE3 is a positive regulator of red light signaling and root growth. The Plant Cell, 18 (1), 70-84.
Delker, C., Sonntag, L., James, G. V., Janitza, P., Ibañez, C., Ziermann, H., . . . Ziegler, J. (2014). The DET1-COP1-HY5 pathway constitutes a multipurpose signaling module regulating plant photomorphogenesis and thermomorphogenesis. Cell Reports, 9 (6), 1983-1989.
Dornan, D., Wertz, I., Shimizu, H., Arnott, D., Frantz, G. D., Dowd, P., . . . Dixit, V. M. (2004). The ubiquitin ligase COP1 is a critical negative regulator of p53. Nature, 429 (6987), 86.
Duek, P. D., Elmer, M. V., van Oosten, V. R., & Fankhauser, C. (2004). The degradation of HFR1, a putative bHLH class transcription factor involved in light signaling, is regulated by phosphorylation and requires COP1. Current Biology, 14 (24), 2296-2301.
Fang, M., Zhou, Z., Zhou, X., Yang, H., Li, M., & Li, H. (2019). Overexpression of OsFTL10 induces early flowering and improves drought tolerance in Oryza sativa L. PeerJ, 7, e6422.
Fiil, B. K., Qiu, J.-L., Petersen, K., Petersen, M., & Mundy, J. (2008). Coimmunoprecipitation (Co-IP) of nuclear proteins and chromatin immunoprecipitation (ChIP) from Arabidopsis . Cold Spring Harbor Protocols, 2008 (9), pdb. prot5049.
Gangappa, S. N., Crocco, C. D., Johansson, H., Datta, S., Hettiarachchi, C., Holm, M., & Botto, J. F. (2013). The Arabidopsis B-BOX protein BBX25 interacts with HY5, negatively regulating BBX22 expression to suppress seedling photomorphogenesis. The Plant Cell, 25 (4), 1243-1257.
Graeff, M., Straub, D., Eguen, T., Dolde, U., Rodrigues, V., Brandt, R., & Wenkel, S. (2016). MicroProtein-mediated recruitment of CONSTANS into a TOPLESS trimeric complex represses flowering in Arabidopsis .PLoS Genetics, 12 (3), e1005959.
Han, M., Jin, X., Yao, W., Kong, L., Huang, G., Tao, Y., . . . Wang, Y. (2017). A Mini Zinc-Finger protein (MIF) from Gerbera hybridaactivates the GASA protein family gene, GEG, to inhibit ray petal elongation. Frontiers in Plant Science, 8 , 1649.
Hardtke, C. S., Gohda, K., Osterlund, M. T., Oyama, T., Okada, K., & Deng, X. W. (2000). HY5 stability and activity in Arabidopsis is regulated by phosphorylation in its COP1 binding domain. The EMBO Journal, 19 (18), 4997-5006.
Hou, K., Wu, W., & Gan, S.-S. (2013). SAUR36, a small auxin up RNA gene, is involved in the promotion of leaf senescence inArabidopsis . Plant Physiology, 161 (2), 1002-1009.
Josse, E.-M., & Halliday, K. J. (2008). Skotomorphogenesis: the dark side of light signalling. Current Biology, 18 (24), R1144-R1146.
Kami, C., Lorrain, S., Hornitschek, P., & Fankhauser, C. (2010). Light-regulated plant growth and development. In Current Topics in Developmental Biology (Vol. 91, pp. 29-66): Elsevier.
Khanna, R., Kronmiller, B., Maszle, D. R., Coupland, G., Holm, M., Mizuno, T., & Wu, S.-H. (2009). The Arabidopsis B-box zinc finger family. The Plant Cell, 21 (11), 3416-3420.
Kircher, S., Gil, P., Kozma-Bognár, L., Fejes, E., Speth, V., Husselstein-Muller, T., . . . Nagy, F. (2002). Nucleocytoplasmic partitioning of the plant photoreceptors phytochrome A, B, C, D, and E is regulated differentially by light and exhibits a diurnal rhythm.The Plant Cell, 14 (7), 1541-1555.
Klepikova, A. V., Kasianov, A. S., Gerasimov, E. S., Logacheva, M. D., & Penin, A. A. (2016). A high resolution map of the Arabidopsis thaliana developmental transcriptome based on RNA‐seq profiling.The Plant Journal, 88 (6), 1058-1070.
Kumagai, T., Ito, S., Nakamichi, N., Niwa, Y., Murakami, M., Yamashino, T., & Mizuno, T. (2008). The common function of a novel subfamily of B-Box zinc finger proteins with reference to circadian-associated events in Arabidopsis thaliana . Bioscience, Biotechnology, and Biochemistry, 72 (6), 1539-1549.
Lau, O. S., & Deng, X. W. (2012). The photomorphogenic repressors COP1 and DET1: 20 years later. Trends in Plant Science, 17 (10), 584-593.
Lee, H.-J., Park, Y.-J., Ha, J.-H., Baldwin, I. T., & Park, C.-M. (2017). Multiple routes of light signaling during root photomorphogenesis. Trends in Plant Science, 22 (9), 803-812.
Lee, J., He, K., Stolc, V., Lee, H., Figueroa, P., Gao, Y., . . . Deng, X. W. (2007). Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development.The Plant Cell, 19 (3), 731-749.
Li, F., Sun, J., Wang, D., Bai, S., Clarke, A. K., & Holm, M. (2014). The B-box family gene STO (BBX24) in Arabidopsis thalianaregulates flowering time in different pathways. PloS One, 9 (2), e87544.
Lin, R., Ding, L., Casola, C., Ripoll, D. R., Feschotte, C., & Wang, H. (2007). Transposase-derived transcription factors regulate light signaling in Arabidopsis . Science, 318 (5854), 1302-1305.
Liu, B., Liu, X., Yang, S., Chen, C., Xue, S., Cai, Y., . . . Ren, H. (2016). Silencing of the gibberellin receptor homolog, CsGID1a, affects locule formation in cucumber (Cucumis sativus ) fruit. New Phytologist, 210 (2), 551-563.
Liu, Y., Lai, J., Yu, M., Wang, F., Zhang, J., Jiang, J., . . . Xu, P. (2016). The Arabidopsis SUMO E3 ligase AtMMS21 dissociates the E2Fa/DPa complex in cell cycle regulation. The Plant Cell , 00439.02016.
McNellis, T. W., & Deng, X.-W. (1995). Light control of seedling morphogenetic pattern. The Plant Cell, 7 (11), 1749.
McNellis, T. W., von Arnim, A. G., & Deng, X.-W. (1994). Overexpression of Arabidopsis COP1 results in partial suppression of light-mediated development: evidence for a light-inactivable repressor of photomorphogenesis. The Plant Cell, 6 (10), 1391-1400.
Muntha, S. T., Zhang, L., Zhou, Y., Zhao, X., Hu, Z., Yang, J., & Zhang, M. (2019). Phytochrome A signal transduction 1 and CONSTANS‐LIKE 13 coordinately orchestrate shoot branching and flowering in leafyBrassica juncea . Plant Biotechnology Journal , 17(7): 1333-1343.
Olle, M., & Viršile, A. (2013). The effects of light-emitting diode lighting on greenhouse plant growth and quality. Agricultural and Food Science, 22 (2), 223-234.
Osterlund, M. T., Hardtke, C. S., Wei, N., & Deng, X. W. (2000). Targeted destabilization of HY5 during light-regulated development ofArabidopsis . Nature, 405 (6785), 462.
Park, H.-Y., Lee, S.-Y., Seok, H.-Y., Kim, S.-H., Sung, Z. R., & Moon, Y.-H. (2011). EMF1 interacts with EIP1, EIP6 or EIP9 involved in the regulation of flowering time in Arabidopsis . Plant and Cell Physiology, 52 (8), 1376-1388.
Preuss, S. B., Meister, R., Xu, Q., Urwin, C. P., Tripodi, F. A., Screen, S. E., . . . Liu, G. (2012). Expression of the Arabidopsis thaliana BBX32 gene in soybean increases grain yield. PloS One, 7 (2), e30717.
Putterill, J., Robson, F., Lee, K., Simon, R., & Coupland, G. (1995). The CONSTANS gene of Arabidopsis promotes flowering and encodes a protein showing similarities to zinc finger transcription factors.Cell, 80 (6), 847-857.
Quail, P. H. (2002). Phytochrome photosensory signalling networks.Nature Reviews Molecular Cell Biology, 3 (2), 85-93.
Robson, F., Costa, M. M. R., Hepworth, S. R., Vizir, I., Pinñeiro, M., Reeves, P. H., . . . Coupland, G. (2001). Functional importance of conserved domains in the flowering‐time gene CONSTANS demonstrated by analysis of mutant alleles and transgenic plants. The Plant Journal, 28 (6), 619-631.
Rosso, M. G., Li, Y., Strizhov, N., Reiss, B., Dekker, K., & Weisshaar, B. (2003). An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics. Plant Molecular Biology, 53 (1-2), 247-259.
Seo, H. S., Watanabe, E., Tokutomi, S., Nagatani, A., & Chua, N.-H. (2004). Photoreceptor ubiquitination by COP1 E3 ligase desensitizes phytochrome A signaling. Genes & Development, 18 (6), 617-622.
Seo, H. S., Yang, J.-Y., Ishikawa, M., Bolle, C., Ballesteros, M. L., & Chua, N.-H. (2003). LAF1 ubiquitination by COP1 controls photomorphogenesis and is stimulated by SPA1. Nature, 423 (6943), 995.
Smith, H. (2000). Phytochromes and light signal perception by plants—an emerging synthesis. Nature, 407 (6804), 585.
Tripathi, P., Carvallo, M., Hamilton, E. E., Preuss, S., & Kay, S. A. (2017). Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering. Proceedings of the National Academy of Sciences of the United States of America, 114 (1), 172-177.
von Arnim, A. G., & Deng, X.-W. (1994). Light inactivation ofArabidopsis photomorphogenic repressor COP1 involves a cell-specific regulation of its nucleocytoplasmic partitioning.Cell, 79 (6), 1035-1045.
Wang, C.-Q., Guthrie, C., Sarmast, M. K., & Dehesh, K. (2014). BBX19 interacts with CONSTANS to repress FLOWERING LOCUS T transcription, defining a flowering time checkpoint in Arabidopsis . The Plant Cell , 26(9): 3589-3602
Wu, F.-H., Shen, S.-C., Lee, L.-Y., Lee, S.-H., Chan, M.-T., & Lin, C.-S. (2009). Tape-Arabidopsis Sandwich-a simpler Arabidopsisprotoplast isolation method. Plant Methods, 5 (1), 16.
Wu, G., Cameron, J. N., Ljung, K., & Spalding, E. P. (2010). A role for ABCB19‐mediated polar auxin transport in seedling photomorphogenesis mediated by cryptochrome 1 and phytochrome B. The Plant Journal, 62 (2), 179-191.
Xu, D., Jiang, Y., Li, J., Holm, M., & Deng, X. W. (2018). The B-box domain protein BBX21 promotes photomorphogenesis. Plant Physiology, 176 (3), 2365-2375.
Xu, D., Jiang, Y., Li, J., Lin, F., Holm, M., & Deng, X. W. (2016). BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.Proceedings of the National Academy of Sciences of the United States of America , 113(27): 7655-7660.
Yang, Y., Ma, C., Xu, Y., Wei, Q., Imtiaz, M., Lan, H., . . . Fei, Z. (2014). A zinc finger protein regulates flowering time and abiotic stress tolerance in chrysanthemum by modulating gibberellin biosynthesis. The Plant Cell , 26(5): 2038-2054.
Zhang, Y., Liu, B., Yang, S., An, J., Chen, C., Zhang, X., & Ren, H. (2014). A cucumber DELLA homolog CsGAIP may inhibit staminate development through transcriptional repression of B class floral homeotic genes. PLoS One, 9 (3), e91804.
Zhang, Y., Zhang, X., Liu, B., Wang, W., Liu, X., Chen, C., . . . Ren, H. (2014). A GAMYB homologue CsGAMYB1 regulates sex expression of cucumber via an ethylene-independent pathway. Journal of Experimental Botany, 65 (12), 3201-3213.