8. References
Allcock, A. L., & Strugnell, J. M. (2012). Southern Ocean diversity: new paradigms from molecular ecology. Trends in Ecology & Evolution , 27 (9), 520–528.
Allio, R., Donega, S., Galtier, N., & Nabholz, B. (2017). Large variation in the ratio of mitochondrial to nuclear mutation rate across animals: Implications for genetic diversity and the use of mitochondrial DNA as a molecular marker. Molecular Biology and Evolution ,34 (11), 2762–2772. https://doi.org/10.1093/molbev/msx197
Baird, H. P., Miller, K. J., & Stark, J. S. (2011). Evidence of hidden biodiversity, ongoing speciation and diverse patterns of genetic structure in giant Antarctic amphipods. Molecular Ecology ,20 (16), 3439–3454.
Ballard, J. W. O., & Whitlock, M. C. (2004). The incomplete natural history of mitochondria. Molecular Ecology , 13 (4), 729–744. https://doi.org/10.1046/j.1365-294X.2003.02063.x
Berna, L., & Alvarez-Valin, F. (2014). Evolutionary genomics of fast evolving tunicates. Genome Biology and Evolution , 6 (7), 1724–1738. https://doi.org/10.1093/gbe/evu122
Bickford, D., Lohman, D. J., Sodhi, N. S., Ng, P. K. L., Meier, R., Winker, K., … Das, I. (2006). Cryptic species as a window on diversity and conservation. Trends in Ecology and Evolution ,22 (3), 148–155. https://doi.org/10.1016/j.tree.2006.11.004
Bishop, J. D. D., Roby, C., Yunnie, A. L. E., Wood, C. A., Lévêque, L., Turon, X., & Viard, F. (2013). The Southern Hemisphere ascidian Asterocarpa humilis is unrecognised but widely established in NW France and Great Britain. Biological Invasions , 15 (2), 253–260.
Bock, D. G., Macisaac, H. J., & Cristescu, M. E. (2012). Multilocus genetic analyses differentiate between widespread and spatially restricted cryptic species in a model ascidian. Proceedings of the Royal Society B: Biological Sciences , 279 (1737), 2377–2385. https://doi.org/10.1098/rspb.2011.2610
Bohonak, A. J. (2002). IBD (isolation by distance): a program for analyses of isolation by distance. Journal of Heredity ,93 (2), 153–154.
Bouchemousse, S., Bishop, J. D. D., & Viard, F. (2016). Contrasting global genetic patterns in two biologically similar, widespread and invasive Ciona species (Tunicata, Ascidiacea). Scientific Reports , 6 (April). https://doi.org/10.1038/srep24875
Bouchemousse, S., Liautard-Haag, C., Bierne, N., & Viard, F. (2016). Distinguishing contemporary hybridization from past introgression with postgenomic ancestry-informative SNPs in strongly differentiated Ciona species. Molecular Ecology , 25 (21), 5527–5542. https://doi.org/10.1111/mec.13854
Bowden, D. A., Clarke, A., & Peck, L. S. (2009). Seasonal variation in the diversity and abundance of pelagic larvae of Antarctic marine invertebrates. Marine Biology , 156 (10), 2033–2047. https://doi.org/10.1007/s00227-009-1235-9
Brunetti, R., Gissi, C., Pennati, R., Caicci, F., Gasparini, F., & Manni, L. (2015). Morphological evidence that the molecularly determined Ciona intestinalis type A and type B are different species: Ciona robusta and Ciona intestinalis. Journal of Zoological Systematics and Evolutionary Research , 53 (3), 186–193. https://doi.org/10.1111/jzs.12101
Caputi, L., Andreakis, N., Mastrototaro, F., Cirino, P., Vassillo, M., & Sordino, P. (2007). Cryptic speciation in a model invertebrate chordate. Proceedings of the National Academy of Sciences ,104 (22), 9364–9369. https://doi.org/10.1073/pnas.0610158104
Cristini, L., Grosfeld, K., Butzin, M., & Lohmann, G. (2012). Influence of the opening of the Drake Passage on the Cenozoic Antarctic Ice Sheet: A modeling approach. Palaeogeography, Palaeoclimatology, Palaeoecology , 339341 , 66–73. https://doi.org/10.1016/j.palaeo.2012.04.023
Dehal, P., Satou, Y., Campbell, R. K., Chapman, J., Degnan, B., De Tomaso, A., … Rokhsar, D. S. (2002). The draft genome of Ciona intestinalis: Insights into chordate and vertebrate origins.Science , 298 (5601), 2157–2167. https://doi.org/10.1126/science.1080049
Delsuc, F., Brinkmann, H., Chourrout, D., & Philippe, H. (2006). Tunicates and not cephalochordates are the closest living relatives of vertebrates. Nature , 439 (7079), 965–968. https://doi.org/10.1038/nature04336
Delsuc, F., Philippe, H., Tsagkogeorga, G., Simion, P., Tilak, M. K., Turon, X., … Douzery, E. J. P. (2018). A phylogenomic framework and timescale for comparative studies of tunicates. BMC Biology ,16 (1), 1–14. https://doi.org/10.1186/s12915-018-0499-2
Denoeud, F., Henriet, S., Mungpakdee, S., Aury, J. M., Da Silva, C., Brinkmann, H., … Chourrout, D. (2010). Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate.Science , 330 (6009), 1381–1385. https://doi.org/10.1126/science.1194167
Dias, G. M., Abreu, A. G., Silva, F. de O. M., & Solferini, V. N. (2008). Microgeographical differentiation between morphotypes of Trididemnum orbiculatum (Tunicata: Ascidiacea) in Southeastern Brazil.Aquatic Biology , 4 (3), 243–252. https://doi.org/10.3354/ab00115
Dietz, L., Arango, C. P., Dömel, J. S., Halanych, K. M., Harder, A. M., Held, C., … Rouse, G. W. (2015). Regional differentiation and extensive hybridization between mitochondrial clades of the Southern Ocean giant sea spider Colossendeis megalonyx. Royal Society Open Science , 2 (7), 140424.
Dömel, J. S., Harder, A. M., Melzer, R. R., Arango, C. P., Held, C., Mayer, C., … Wilson, N. G. (2015). Regional differentiation and extensive hybridization between mitochondrial clades of the Southern Ocean giant sea spider Colossendeis megalonyx . Royal Society Open Science , 2 (7), 140424. https://doi.org/10.1098/rsos.140424
Drummond, A. J., Suchard, M. A., Xie, D., & Rambaut, A. (2012). Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution , 29 (8), 1969–1973.
Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research ,32 (5), 1792–1797.
Edmands, S. (2002). Does parental divergence predict reproductive compatibility? Trends in Ecology and Evolution , 17 (11), 520–527. https://doi.org/10.1016/S0169-5347(02)02585-5
Excoffier, L., Laval, G., & Schneider, S. (2005). Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evolutionary Bioinformatics , 1 , 117693430500100000.
Fišer, C., Robinson, C. T., & Malard, F. (2018). Cryptic species as a window into the paradigm shift of the species concept. Molecular Ecology , 27 (3), 613–635. https://doi.org/10.1111/mec.14486
Folmer, O., Hoeh, W. R., Black, M. B., & Vrijenhoek, R. C. (1994). Conserved primers for PCR amplification of mitochondrial DNA from different invertebrate phyla. Molecular Marine Biology and Biotechnology , 3 , 294–299.
Galaska, M. P., Sands, C. J., Santos, S. R., Mahon, A. R., & Halanych, K. M. (2017). Geographic structure in the Southern Ocean circumpolar brittle star Ophionotus victoriae (Ophiuridae) revealed from mt DNA and single‐nucleotide polymorphism data. Ecology and Evolution ,7 (2), 475–485.
Ganot, P., Kallesøe, T., Reinhardt, R., Chourrout, D., & Thompson, E. M. (2004). with a Compact Genome †. Society , 24 (17), 7795–7805. https://doi.org/10.1128/MCB.24.17.7795
Gili, J. M., Arntz, W. E., Palanques, A., Orejas, C., Clarke, A., Dayton, P. K., … López-González, P. J. (2006). A unique assemblage of epibenthic sessile suspension feeders with archaic features in the high-Antarctic. Deep-Sea Research Part II: Topical Studies in Oceanography , 53 (8–10), 1029–1052. https://doi.org/10.1016/j.dsr2.2005.10.021
Gissi, C., Pesole, G., Mastrototaro, F., Iannelli, F., Guida, V., & Griggio, F. (2010). Hypervariability of ascidian mitochondrial gene order: Exposing the Myth of deuterostome organelle genome stability.Molecular Biology and Evolution , 27 (2), 211–215. https://doi.org/10.1093/molbev/msp234
Givnish, T. J., Barfuss, M. H. J., Van Ee, B., Riina, R., Schulte, K., Horres, R., … Smith, J. A. C. (2014). Adaptive radiation, correlated and contingent evolution, and net species diversification in Bromeliaceae. Molecular Phylogenetics and Evolution , 71 , 55–78.
Griggio, F., Voskoboynik, A., Iannelli, F., Justy, F., Tilak, M. K., Xavier, T., … Gissi, C. (2014). Ascidian mitogenomics: Comparison of evolutionary rates in closely related taxa provides evidence of ongoing speciation events. Genome Biology and Evolution ,6 (3), 591–605. https://doi.org/10.1093/gbe/evu041
Guindon, S., Dufayard, J.-F., Lefort, V., Anisimova, M., Hordijk, W., & Gascuel, O. (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.Systematic Biology , 59 (3), 307–321.
Halanych, K. M., & Mahon, A. R. (2018). Challenging dogma concerning biogeographic patterns of Antarctica and the Southern Ocean.Annual Review of Ecology, Evolution, and Systematics , 49 , 355–378.
Hammer, Ø., Harper, D. A. T., & Ryan, P. D. (2001). PAST: paleontological statistics software package for education and data analysis. Palaeontologia Electronica , 4 (1), 9.
Harmon, L. J., Schulte II, J. A., Larson, A., & Losos, J. B. (2003). Tempo and Mode of Evolutionary Radiation in Iguanian Lizards\r10.1126/science.1084786. Science ,301 (5635), 961–964. Retrieved from http://www.sciencemag.org/cgi/content/abstract/301/5635/961
Haubold, B., Pfaffelhuber, P., & Lynch, M. (2010). MlRho - A program for estimating the population mutation and recombination rates from shotgunsequenced diploid genomes. Molecular Ecology ,19 (SUPPL. 1), 277–284. https://doi.org/10.1111/j.1365-294X.2009.04482.x
Havermans, C., Nagy, Z. T., Sonet, G., De Broyer, C., & Martin, P. (2011). DNA barcoding reveals new insights into the diversity of Antarctic species of Orchomene sensu lato (Crustacea: Amphipoda: Lysianassoidea). Deep Sea Research Part II: Topical Studies in Oceanography , 58 (1–2), 230–241.
Havird, J. C., & Sloan, D. B. (2016). The roles of mutation, selection, and expression in determining relative rates of evolution in mitochondrial versus nuclear genomes. Molecular Biology and Evolution , 33 (12), 3042–3053. https://doi.org/10.1093/molbev/msw185
Hebert, P. D. N., Cywinska, A., Ball, S. L., & deWaard, J. R. (2003). Biological identifications through DNA barcodes. Proceedings. Biological Sciences / The Royal Society , 270 (1512), 313–321. https://doi.org/10.1098/rspb.2002.2218
Held, Christoph, & Wägele, J.-W. (2005). Cryptic speciation in the giant Antarctic isopod Glyptonotus antarcticus (Isopoda: Valvifera: Chaetiliidae). Scientia Marina , 69 (2), 175–181. https://doi.org/10.3989/scimar.2005.69s2175
Held, Chrostoph. (2003). Molecular evidence for cryptic speciation within the widespread Antarctic crustacean Ceratoserolis trilobitoides (Crustacea, Isopoda). Antarctic Biology in a Global Context, Proceedings , 3 (Kattner 1998), 135–139 338.
Hemery, L. G., Eléaume, M., Roussel, V., Améziane, N., Gallut, C., Steinke, D., … Wilson, N. G. (2012). Comprehensive sampling reveals circumpolarity and sympatry in seven mitochondrial lineages of the Southern Ocean crinoid species Promachocrinus kerguelensis (Echinodermata). Molecular Ecology , 21 (10), 2502–2518.
Hewitt, G. M. (2004). Genetic consequences of climatic oscillations in the Quaternary. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences , 359 (1442), 183–195; discussion 195. https://doi.org/10.1098/rstb.2003.1388
Hill, G. E. (2015). Mitonuclear ecology. Molecular Biology and Evolution , 32 (8), 1917–1927. https://doi.org/10.1093/molbev/msv104
Hirose, E., Oka, A. T., & Hirose, M. (2009). Two new species of photosymbiotic ascidians of the genus Diplosoma from the Ryukyu Archipelago, with partial sequences of the COI gene. Zoological Science , 26 (5), 362–368. https://doi.org/10.2108/zsj.26.362
Janosik, A. M., & Halanych, K. M. (2010). Unrecognized Antarctic biodiversity: a case study of the genus Odontaster (Odontasteridae; Asteroidea). Integrative and Comparative Biology , 50 (6), 981–992.
Kearse, M., Moir, R., Wilson, A., Stones-Havas, S., Cheung, M., Sturrock, S., … Duran, C. (2012). Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics , 28 (12), 1647–1649.
Korshunova, T., Martynov, A., Bakken, T., & Picton, B. (2017). External diversity is restrained by internal conservatism: new nudibranch mollusc contributes to the cryptic species problem. Zoologica Scripta ,46 (6), 683–692.
Kosman, E. T., & Levitan, D. R. (2014). Sperm competition and the evolution of gametic compatibility in externally fertilizing taxa.Molecular Human Reproduction , 20 (12), 1190–1197.
Kott, P. (1971). Antarctic Ascidiacea II. Biology of the Antarctic Seas IV , 17 , 11–82.
Kott, P. (1985). The Australian ascidiacea part IP, Phlebobranchia and Stolidobranchia. Mem. Qd Mus. , 23 .
Kott, P., & Mather, P. (1969). Antarctic Ascidiacea: Monographic Account of the Known Species Based on Specimens Collected Under US Government Auspices, 1947-1965 (Vol. 13). American Geophysical Union.
Kumar, S., Stecher, G., Li, M., Knyaz, C., & Tamura, K. (2018). MEGA X: molecular evolutionary genetics analysis across computing platforms.Molecular Biology and Evolution , 35 (6), 1547–1549.
Lacoursière-Roussel, A., Bock, D. G., Cristescu, M. E., Guichard, F., Girard, P., Legendre, P., & McKindsey, C. W. (2012). Disentangling invasion processes in a dynamic shipping-boating network.Molecular Ecology , 21 (17), 4227–4241. https://doi.org/10.1111/j.1365-294X.2012.05702.x
Lejeusne, C., Bock, D. G., Therriault, T. W., MacIsaac, H. J., & Cristescu, M. E. (2011). Comparative phylogeography of two colonial ascidians reveals contrasting invasion histories in North America.Biological Invasions , 13 (3), 635–650. https://doi.org/10.1007/s10530-010-9854-0
Levitan, D. R., McGhee, K. E., Swanson, C. A., Fukami, H., Jara, J., Kline, D., … McGovern, T. M. (2004). Mechanisms of reproductive isolation among sympatric broadcast-spawning corals of the Montastraea annularis species complex. Evolution , 58 (2), 308–323. https://doi.org/10.1111/j.0014-3820.2004.tb01647.x
Librado, P., & Rozas, J. (2009). DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics , 25 (11), 1451–1452. https://doi.org/10.1093/bioinformatics/btp187
Liem, K. F. (1973). Evolutionary strategies and morphological innovations: cichlid pharyngeal jaws. Systematic Zoology ,22 (4), 425–441.
Linse, K., Cope, T., Lörz, A.-N., & Sands, C. (2007). Is the Scotia Sea a centre of Antarctic marine diversification? Some evidence of cryptic speciation in the circum-Antarctic bivalve Lissarca notorcadensis (Arcoidea: Philobryidae). Polar Biology , 30 (8), 1059–1068.
Losos, J. B. (2008). Phylogenetic niche conservatism, phylogenetic signal and the relationship between phylogenetic relatedness and ecological similarity among species. Ecology Letters ,11 (10), 995–1003. https://doi.org/10.1111/j.1461-0248.2008.01229.x
Maddison, W. P. (1997). Gene trees in species trees. Systematic Biology , 46 (3), 523–536.
Mayr, E. (1963). Animal species and evolution. Animal Species and Evolution.
Millar, R. H. (1960). The identity of the ascidians Styela mammiculata Carlisle and S. clava Herdman. Journal of the Marine Biological Association of the United Kingdom , 39 (3), 509–511.
Monniot, C., & Monniot, F. (1983). Ascidies antarctiques et subantarctiques: morphologie et biogéographie . Éditions du Muséum.
Monniot, C., Monniot, F., & Laboute, P. (1991). Coral reef ascidians of New Caledonia . IRD Editions.
Monniot, F., Dettai, A., Eleaume, M., Cruaud, C., & Ameziane, N. (2011). Antarctic Ascidians (Tunicata) of the French-Australian survey CEAMARC in Terre Adélie. Zootaxa , 2817 (1), 1–54.
Montano, S., Maggioni, D., Galli, P., & Hoeksema, B. W. (2017). A cryptic species in the Pteroclava krempfi species complex (Hydrozoa, Cladocorynidae) revealed in the Caribbean. Marine Biodiversity ,47 (1), 83–89.
Nosil, P. (2008). Speciation with gene flow could be common.Molecular Ecology , 17 (9), 2103–2106.
Nydam, M. L., Giesbrecht, K. B., & Stephenson, E. E. (2017a). Origin and dispersal history of two colonial ascidian clades in the Botryllus schlosseri species complex. PLoS ONE , 12 (1), 1–30. https://doi.org/10.1371/journal.pone.0169944
Nydam, M. L., Giesbrecht, K. B., & Stephenson, E. E. (2017b). Origin and dispersal history of two colonial ascidian clades in the Botryllus schlosseri species complex. PLoS ONE , 12 (1), 1–30. https://doi.org/10.1371/journal.pone.0169944
Nydam, M. L., & Harrison, R. G. (2007). Genealogical relationships within and among shallow-water Ciona species (Ascidiacea). Marine Biology , 151 (5), 1839–1847. https://doi.org/10.1007/s00227-007-0617-0
Nydam, M. L., & Harrison, R. G. (2010). Polymorphism and divergence within the ascidian genus Ciona. Molecular Phylogenetics and Evolution , 56 (2), 718–726. https://doi.org/10.1016/j.ympev.2010.03.042
Nydam, M. L., & Harrison, R. G. (2011). Introgression despite substantial divergence in a broadcast spawning marine invertebrate.Evolution , 65 (2), 429–442. https://doi.org/10.1111/j.1558-5646.2010.01153.x
Nydam, M. L., Yanckello, L. M., Bialik, S. B., Giesbrecht, K. B., Nation, G. K., Peak, J. L., & Marcos, S. (2017). Introgression in two species of broadcast spawning marine invertebrate, 879–890.
Pamilo, P., & Nei, M. (1988). Relationships between gene trees and species trees. Molecular Biology and Evolution , 5 (5), 568–583.
Pérez-Portela, R., Bishop, J. D. D., Davis, A. R., & Turon, X. (2009). Phylogeny of the families Pyuridae and Styelidae (Stolidobranchiata, Ascidiacea) inferred from mitochondrial and nuclear DNA sequences.Molecular Phylogenetics and Evolution , 50 (3), 560–570. https://doi.org/10.1016/j.ympev.2008.11.014
Pérez-Portela, Rocío, & Turon, X. (2008). Cryptic divergence and strong population structure in the colonial invertebrate Pycnoclavella communis (Ascidiacea) inferred from molecular data. Zoology ,111 (2), 163–178. https://doi.org/10.1016/j.zool.2007.06.006
Petit, R. J., Raynaud, D., Basile, I., Chappellaz, J., Ritz, C., Delmotte, M., … Pe, L. (1999). Climate and atmospheric history of the past 420,000 years from the Vostok ice core, Antarctica.Nature , 399 , 429–413. https://doi.org/10.1038/20859
Pineda, M. C., Turon, X., Pérez-Portela, R., & López-Legentil, S. (2016). Stable populations in unstable habitats: temporal genetic structure of the introduced ascidian Styela plicata in North Carolina.Marine Biology , 163 (3), 1–14. https://doi.org/10.1007/s00227-016-2829-7
Puillandre, N., Lambert, A., Brouillet, S., & Achaz, G. (2012). ABGD, Automatic Barcode Gap Discovery for primary species delimitation.Molecular Ecology , 21 (8), 1864–1877. https://doi.org/10.1111/j.1365-294X.2011.05239.x
Ramos-esplá, A. a, Cárcel, J. a, & Varela, M. (2005). Zoogeographical relationships of the littoral ascidiofauna around the Antarctic Peninsula , in the Scotia Arc and in the Magellan region. Scentia Marina , 69 , 215–223. https://doi.org/10.3989/scimar.2005.69s2215
Raupach, M. J., Thatje, S., Dambach, J., Rehm, P., Misof, B., & Leese, F. (2010). Genetic homogeneity and circum-Antarctic distribution of two benthic shrimp species of the Southern Ocean, Chorismus antarcticus and Nematocarcinus lanceopes. Marine Biology , 157 (8), 1783–1797.
Reem, E., Douek, J., Katzir, G., & Rinkevich, B. (2013). Long-term population genetic structure of an invasive urochordate: The ascidian Botryllus schlosseri. Biological Invasions , 15 (1), 225–241. https://doi.org/10.1007/s10530-012-0281-2
Reem, E., Douek, J., Paz, G., Katzir, G., & Rinkevich, B. (2017). Phylogenetics, biogeography and population genetics of the ascidian Botryllus schlosseri in the Mediterranean Sea and beyond.Molecular Phylogenetics and Evolution , 107 , 221–231. https://doi.org/10.1016/j.ympev.2016.10.005
Riesgo, A., Taboada, S., & Avila, C. (2015). Evolutionary patterns in Antarctic marine invertebrates: An update on molecular studies.Marine Genomics , 23 , 1–13. https://doi.org/10.1016/j.margen.2015.07.005
Rocha, R. M. da, Zanata, T. B., & Moreno, T. R. (2012). Keys for the identification of families and genera of Atlantic shallow water ascidians. Biota Neotropica , 12 (1), 269–303.
Rogers, A. D. (2007). Evolution and Biodiversity of Antarctic Organisms: A Molecular Perspective. Antarctic Ecosystems: An Extreme Environment in a Changing World , (May), 417–467. https://doi.org/10.1002/9781444347241.ch14
Ronquist, F., Teslenko, M., Van Der Mark, P., Ayres, D. L., Darling, A., Höhna, S., … Huelsenbeck, J. P. (2012). MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology , 61 (3), 539–542.
Roux, C., Tsagkogeorga, G., Bierne, N., & Galtier, N. (2013). Crossing the species barrier: genomic hotspots of introgression between two highly divergent Ciona intestinalis species. Molecular Biology and Evolution , 30 (7), 1574–1587.
Rubinstein, N. D., Feldstein, T., Shenkar, N., Botero-Castro, F., Griggio, F., Mastrototaro, F., … Huchon, D. (2013). Deep sequencing of mixed total DNA without barcodes allows efficient assembly of highly plastic Ascidian mitochondrial genomes. Genome Biology and Evolution , 5 (6), 1185–1199. https://doi.org/10.1093/gbe/evt081
Sahade, Ricaerdo, Tatián, M., Kowalke, J., Kühne, S., & Esnal, G. B. (1998). Benthic faunal associations on soft substrates at Potter Cove, King George Island, Antarctica. Polar Biology , 19 (2), 85–91.
Sahade, Ricardo, Tatián, M., & Esnal, G. (2004). Reproductive ecology of the ascidian Cnemidocarpa verrucosa at Potter Cove, South Shetland Islands, Antarctica. Marine Ecology Progress Series ,272 (Clarke 1988), 131–140. https://doi.org/10.3354/meps272131
Sato, A., Shimeld, S. M., & Bishop, J. D. D. (2014). Symmetrical reproductive compatibility of two species in the Ciona intestinalis (Ascidiacea) species complex, a model for marine genomics and developmental biology. Zoological Science , 31 (6), 369–374.
Satou, Y., Mineta, K., Ogasawara, M., Sasakura, Y., Shoguchi, E., Ueno, K., … Inaba, K. (2008). Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: New insight into intron and operon populations.Genome Biology , 9 (10), 1–11. https://doi.org/10.1186/gb-2008-9-10-r152
Schluter, D. (2000). Ecological Character Displacement in Adaptive Radiation. The American Naturalist , 156 (4), S4–S16. https://doi.org/https://doi.org/10.1086/303412
Seehausen, O., Koetsier, E., Schneider, M. V., Chapman, L. J., Chapman, C. A., Knight, M. E., … Bills, R. (2003). Nuclear markers reveal unexpected genetic variation and a Congolese-Nilotic origin of the Lake Victoria cichlid species flock. Proceedings of the Royal Society B: Biological Sciences , 270 (1511), 129–137. https://doi.org/10.1098/rspb.2002.2153
Simpson, G. G. (1953). The major features of evolution .
Soler-Membrives, A., Linse, K., Miller, K. J., & Arango, C. P. (2017). Genetic signature of last glacial maximum regional refugia in a circum-antarctic sea spider. Royal Society Open Science ,4 (10). https://doi.org/10.1098/rsos.170615
Stach, T., & Turbeville, J. M. (2002). Phylogeny of Tunicata inferred from molecular and morphological characters. Molecular Phylogenetics and Evolution , 25 (3), 408–428. https://doi.org/Pii S1055-7903(02)00305-6
Stefaniak, L., Lambert, G., Gittenberger, A., Zhang, H., Lin, S., & Whitlatch, R. B. (2009). Genetic conspecificity of the worldwide populations of Didemnum vexillum Kott, 2002. Aquatic Invasions ,4 (1), 87–94. https://doi.org/10.3391/ai. 2009.4.1.3
Stephens, M., & Donnelly, P. (2003). A comparison of bayesian methods for haplotype reconstruction from population genotype data. The American Journal of Human Genetics , 73 (5), 1162–1169.
Stephens, M., Smith, N. J., & Donnelly, P. (2001). A new statistical method for haplotype reconstruction from population data. The American Journal of Human Genetics , 68 (4), 978–989.
Strathmann, R. R., Kendall, L. R., & Marsh, A. G. (2006). Embryonic and larval development of a cold adapted Antarctic ascidian. Polar Biology , 29 (6), 495–501. https://doi.org/10.1007/s00300-005-0080-7
Tatian, M., Sahade, R. J., Doucet, M. E., & Esnal, G. B. (1998). Ascidians (Tunicata, Ascidiacea) of Potter Cove, South Shetland Islands, Antarctica. Antarctic Science , 10 (2), 147–152. https://doi.org/10.1017/s0954102098000194
Tatián, M, & Lagger, C. (2010). Ascidiacea-Ascidians. Marine Benthic Fauna of Chilean Patagonia. Nature in Focus, Puerto Montt .
Tatián, M, Sahade, R. J., Doucet, M. E., & Esnal, G. B. (1998). Ascidians (Tunicata, Ascidiacea) of Potter Cove, South Shetland Islands, Antarctica. Antarctic Science , 10 (02), 147–152. https://doi.org/10.1017/S0954102098000194
Tatián, Marcos, Antacli, J. C., & Sahade, R. (2005). Ascidians (Tunicata, Ascidiacea): species distribution along the Scotia Arc.Scientia Marina , 69 (S2), 205–214. https://doi.org/10.3989/scimar.2005.69s2205
Tsagkogeorga, G., Turon, X., Hopcroft, R. R., Tilak, M.-K., Feldstein, T., Shenkar, N., … Delsuc, F. (2009). An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models.BMC Evolutionary Biology , 9 (1), 187. https://doi.org/10.1186/1471-2148-9-187
Turon, X., Cañete, J. I., Sellanes, J., Rocha, R. M., & López-legentil, S. (2016). Too cold for invasions? Contrasting patterns of native and introduced ascidians in subantarctic and temperate Chile.Management of Biological Invasions , 7 (1), 77–86. https://doi.org/10.3391/mbi.2016.7.1.10
Turon, X., Cañete, J. I., Sellanes, J., Rocha, R. M., & López-Legentil, S. (2016). Ascidian fauna (Tunicata, Ascidiacea) of subantarctic and temperate regions of Chile Millenium Nucleus for Ecology and Sustainable Management of Oceanic Islands (ESMOI), Chile. Zootaxa ,4093 (2), 151–180. https://doi.org/10.11646/zootaxa.4093.2.1
Vacquier, V. D., & Swanson, W. J. (2011). Selection in the rapid evolution of gamete recognition proteins in marine invertebrates.Cold Spring Harbor Perspectives in Biology , 3 (11), a002931.
Viard, F., Roby, C., Turon, X., Bouchemousse, S., & Bishop, J. (2019). Cryptic diversity and database errors challenge non-indigenous species surveys: an illustration with Botrylloides spp. in the English Channel and Mediterranean Sea. Frontiers in Marine Science , 6 , 615.
Wendel, J. F., & Doyle, J. J. (1998). Phylogenetic incongruence: window into genome history and molecular evolution. In Molecular systematics of plants II (pp. 265–296). Springer.
Wiernes, M. P., Sahade, R., Tatián, M., & Chiappero, M. B. (2013). Genetic variability and differentiation among polymorphic populations of the genus Synoicum (Tunicata, Ascidiacea) from the South Shetland Islands. Polar Biology , 36 (6), 871–883.
Wilson, N. G., Hunter, R. L., Lockhart, S. J., & Halanych, K. M. (2007). Multiple lineages and absence of panmixia in the “circumpolar” crinoid Promachocrinus kerguelensis from the Atlantic sector of Antarctica. Marine Biology , 152 (4), 895–904. https://doi.org/10.1007/s00227-007-0742-9
Yokobori, S., Kurabayashi, A., Neilan, B. A., Maruyama, T., & Hirose, E. (2006). Multiple origins of the ascidian- Prochloron symbiosis : Molecular phylogeny of photosymbiotic and non-symbiotic colonial ascidians inferred from 18S rDNA sequences, 40 , 8–19. https://doi.org/10.1016/j.ympev.2005.11.025
Yund, P. O., Collins, C., & Johnson, S. L. (2015). Evidence of a native northwest atlantic COI haplotype clade in the cryptogenic colonial ascidian Botryllus schlosseri. Biological Bulletin ,228 (3), 201–216. https://doi.org/10.1086/BBLv228n3p201
Zachos, J. C., Pagani, M., Sloan, L., Thomas, E., & Billups, K. (2001). Trends, Rhythms, and Aberrations in Global Climate 65 Ma to Present: Discovery Service para UNAM. Science , 292 (5517), 686–693. https://doi.org/10.1126/science.1059412
Zhou, Y., Duvaux, L., Ren, G., Zhang, L., Savolainen, O., & Liu, J. (2017). Importance of incomplete lineage sorting and introgression in the origin of shared genetic variation between two closely related pines with overlapping distributions. Heredity , 118 (3), 211–220. https://doi.org/10.1038/hdy.2016.72
Zigler, K. S., McCartney, M. A., Levitan, D. R., & Lessios, H. A. (2005). Sea urchin bindin divergence predicts gamete compatibility.Evolution , 59 (11), 2399–2404.