Note: P-values were adjusted for multiple testing using the Benjamini and Hochberg (1995) false discovery rate and then transformed with -Log10(P). The -Log10(P) values were shaded light to dark to indicate critical values of 1.3, 2.0, and 3.0 corresponding to alpha levels of 0.050, 0.010, and 0.001, respectively. Included in this table are the total number of loci (N) genotyped on each chromosome, the number of loci with significant adjusted P-values (P N), and the “average” and “range” of -Log10(P) values across loci with significant adjusted P-values. The adjusted -Log10(P) values for representative candidate SNPs Etr_464, Etr_5317, and Etr_1806 are provided for chromosomes 1, 2, and 4, respectively.
Table S9b. The number and values of significant association tests on four evolutionarily important chromosomes and their representative candidate SNPs for traits and datasets analyzed in this study.