2.4 Recombination analysis
Recombination event analysis was carried out by analyzing the complete
genome for the potential recombination of CH-GX-01-2019. RDP4
(http://web.cbio.uct.ac.za/ ~darren/rdp.html)
(Martin et al., 2010) software (RDP,
Bootscan, MaxChi, GENECONV, Chimaera, SiScan and 3Seq), along with
SimPlot (http://sray.med.som.jhmi.edu/RaySoft)
(Lole et al., 1999) software, were used
to analyze events relating to recombination. Recombination signals and
the sequences of recombination parental lineages were analyzed using
SimPlot.