REFERENCES
Abdullah, A. S., Moffat, C. S., Lopez-Ruiz, F. J., Gibberd, M. R., Hamblin, J., & Zerihun, A. (2017). Host–multi-pathogen warfare: pathogen interactions in co-infected plants. Frontiers in Plant Science , 8,1806.
Al-Naimi F. A., Garrett, K. A., & Bockus, W. W. (2005). Competition, facilitation, and niche differentiation in two foliar pathogens.Oecologia , 143, 449–457.
Bellieny-Rabelo, D., Tanui, C.K., Miguel, N., Kwenda, S., Shyntum, D.Y., & Moleleki, L.N. (2019). Transcriptome and comparative genomics analyses reveal new functional insights on key determinants of pathogenesis and interbacterial competition in Pectobacterium andDickeya spp. Applied and Environmental Microbiology , 85, pii:e02050-18.
Burns, J. H., Murphy, J. E., & Zheng, Y. L. (2018). Tests of alternative evolutionary models are needed to enhance our understanding of biological invasions. New Phytologist, 222, 701-707.
Cadotte, M. W., Campbell, S. E., Li, S. P., Sodhi, D. S., & Mandrak, N. E. (2018). Preadaptation and naturalization of nonnative species: Darwin’s two fundamental insights into species invasion. Annual Reviews of Plant Biology , 69, 661-684.
Charkowsky, A.O. (2018). The changing face of bacterial soft-rot diseases. Annual Reviews of Phytopathology, 56, 269-288.
Chen, X. F., Zhang H. L., & Chen, J. (2015). First report ofDickeya solani causing soft-rot in imported bulbs ofHyacinthus orientalis in China. Plant Disease, 99,155.
Crépin, A., Barbey, C., Beury-Cirou, A., Hélias, V., Taupin, L., Reverchon, S., … Latour X. (2012). Quorum sensing signaling molecules produced by reference and emerging soft-rot bacteria (Dickeya and Pectobacterium spp.). PLoS One , 7, e35176.
Czajkowski, R., de Boer, W. J., van der Zouwen, P. S., Kastelein, P., Jafra, S., de Haan, E.G., … van der Wolf, J. M. (2013). Virulence of ‘Dickeya solani ’ and Dickeya dianthicolabiovar‐1 and ‐7 strains on potato (Solanum tuberosum ).Plant Pathol ology, 62, 597-610.
Czajkowski, R., de Boer, W. J., Velvis, H., & van der Wolf, J. M. (2010). Systemic colonization of potato plants by a soilborne, green fluorescent protein-tagged strain of Dickeya sp. biovar 3.Phytopathology, 100, 134-142.
Duprey, A., Nasser, W., Léonard, S., Brochier‐Armanet, C., & Reverchon, S. (2016). Transcriptional start site turnover in the evolution of bacterial paralogous genes – the pelE-pelD virulence genes inDickeya . FEBS Journal, 283, 4192–4207.
Facon, B., Genton, B. J., Shykoff, J., Jarne, P., Estoup, A., & David, P. (2006). A general eco-evolutionary framework for understanding bioinvasions. Trends in Ecology & Evolution , 21, 130–135.
Feltner, J. B., Wolter, D. J., Pope, C. E., Groleau, M. C., Smalley, N., E., Greenberg, E. P., … Dandekar, A. A. (2016). LasR variant cystic fibrosis isolates reveal an adaptable quorum-sensing hierarchy inPseudomonas aeruginosa . mBio 7(5): e01513-16.
Francisco, A. P., Vaz, C., Monteiro, P. T., Melo-Cristino, J., Ramirez, M., & Carriço, J. A. (2012). PHYLOViZ: Phylogenetic inference and data visualization for sequence based typing methods. BMC Bioinformatics, 13, 87.
Germain, R. M., Mayfield, M. M., & Gilbert, B. (2018). The ’filtering’ metaphor revisited: competition and environment jointly structure invasibility and coexistence. Biology Letters, 14, 20180460.
Gladieux, P., Feurtey, A., Hood, M. E., Snirc, A., Clavel, J., Dutech, C., … Giraud, T. (2015) The population biology of fungal invasions. Molecular Ecology, 24, 1969-1986.
Golanowska, M., Potrykus, M., Motyka-Pomagruk, A., Kabza, M., Bacci, G., Galardini, M., … Lojkowska, E. (2018). Comparison of highly and weakly virulent Dickeya solani strains, with a view on the pangenome and panregulon of this species. Frontiers in Microbiology, 9,1940.
Guidot, A., Jiang, W., Ferdy, J.B., Thébaud, C., Barberis, P., Gouzy, J., & Genin, S. (2014). Multihost experimental evolution of the pathogen Ralstonia solanacearum unveils genes involved in adaptation to plants. Molecular Biology and Evolution , 31, 2913–2928.
Hélias, V., Hamon, P., Huchet, E., Wolf, J. V. D., & Andrivon, D. (2012). Two new effective semiselective crystal violet pectate media for isolation of Pectobacterium and Dickeya . Plant Pathol ogy, 61, 339-345.
Kelley, L. A., Mezulis, S., Yates, C. M., Wass, M. N., & Sternberg, M. J. E. (2015). The Phyre2 web portal for protein modeling, prediction and analysis. Nature Protocols, 10, 845–858.
Khayi, S., Blin, P., Pédron, J., Chong, T. M., Chan, K. G., Moumni, M., … Faure, D. (2015). Population genomics reveals additive and replacing horizontal gene transfers in the emerging pathogenDickeya solani . BMC Genomics, 16, 788.
Kinnunen, M., Dechesne, A., Proctor, C., Hammes, F., Johnson, D., Quintela-Baluja, M., … Smets BF. (2016). A conceptual framework for invasion in microbial communities. ISME Journal , 10, 2773-2775.
Kumar, S., Stecher, G., & Tamura, K. (2016). MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger dataset.Molecular Biology and Evolution , 33, 1870-1874.
Laurila, J., Ahola, V., Lehtinen, A., Joutsjoki, T., Hannukkala, A., Rahkonen, A., & Pirhonen, M. (2008). Characterization of Dickeyastrains isolated from potato and river water samples in Finland.European Journal of Plant Pathology , 122, 213-225.
Léonard, S., Hommais, F., Nasser, W., & Reverchon, S. (2017). Plant-phytopathogen interactions: bacterial responses to environmental and plant stimuli. Environmental Microbiology , 19, 1689-1716.
Litchman, E. (2010). Invisible invaders: non-pathogenic invasive microbes in aquatic and terrestrial ecosystems. Ecology Letters,13, 1560-1572.
MacDougall, A. S., Gilbert, B., & Levine, J. M. (2009). Plant invasions and the niche. Journal of Ecology, 97, 609-615.
Mallon, C. A., Elsas, J. D. V., & Salles, J. F. (2015). Microbial invasions: the process, patterns, and mechanisms. Trends in Microbiology , 23, 719-729.
Nasser, W., Dorel, C., Wawrzyniak, J., Van Gijsegem, F., Groleau, M. C., Déziel, E., & Reverchon, S. (2013). Vfm a new quorum sensing system controls the virulence of Dickeya dadantii. Environmental Microbiology , 15, 865-880.
Oulghazi, S., Khayi, S., Lafkih, N., Massaoudi Y, El Karkouri A, El Hassouni M, … Moumni, M. (2017). First report of Dickeya dianthicola causing blackleg disease on potato in Morocco. Plant Disease , 101, 1671.
Parkinson, N., Stead, D., Bew, J., Heeney, J., Tsror Lahkim, L., & Elphinstone, J. (2009). Dickeya species relatedness and clade structure determined by comparison of recA sequences.International Journal of Systematic and Evolutionary Microbiology, 59, 2388-2393.
Patel, N., Baldwin, A. C., Patel, R. D., Kobayashi, D. Y., & Wyenandt, C. A. (2019). First report of Dickeya dianthicola causing blackleg and soft-rot on potato (Solanum tuberosum ) in New Jersey, U.S.A. Plant Disease , 103, 146.
Perkins, L. B., Leger, E. A., & Nowak, R. S. (2011). Invasion triangle: an organizational framework for species invasion. Ecology and Evolution , 1, 610-625.
Pérombelon, M. C. M. (2002). Potato diseases caused by soft-rot erwinias: an overview of pathogenesis. Plant Pathology , 51, 1–12.
Potrykus, M., Golanowska, M., Hugouvieux-Cotte-Pattat, N., & Lojkowska, E. (2014). Regulators involved in Dickeya solani virulence, genetic conservation and functional variability. Molecular Plant Microbe Interactions, 27, 700-711.
Potrykus, M., Golanowska, M., Sledz, W., Zoledowska, S., Motyka, A., Kolodziejska, A., … Lojkowska, E. (2016). Biodiversity ofDickeya spp. isolated from potato plants and water sources in temperate climate. Plant Disease, 100, 408-417.
Potrykus, M., Hugouvieux-Cotte-Pattat, N., & Lojkowska, E. (2018). Interplay of classic Exp and specific Vfm quorum sensing systems on the phenotypic features of Dickeya solani strains exhibiting different virulence levels.Molecular Plant Pathology , 19, 1238-1251.
Raoul des Essarts, Y., Cigna, J., Quêtu-Laurent, A., Caron, A., Munier, E., Beury-Cirou, A., … Faure, D. (2015). Biocontrol of the potato blackleg and soft rot diseases caused by Dickeya dianthicola .Applied and Environmental Microbiology , 82, 268-278.
Raoul des Essarts, Y., Pédron, J., Blin, P., Van Dijk, E., Faure, D., & Van Gijsegem, F. (2019). Common and distinctive adaptive traits expressed in Dickeya dianthicola and Dickeya solanipathogens when exploiting potato plant host. Environmental Microbiology, 21, 1004-1018.
Reynolds, C.R., Islam, S. A., Sternberg, M. J. E. (2018). EzMol: A Web Server Wizard for the Rapid Visualization and Image Production of Protein and Nucleic Acid Structures. Journal of Molecular Biology, 430, 2244–2248.
Sarfraz, S., Riaz, K., Oulghazi, S., Cigna, J., Alam, M. W., Dessaux, Y., & Faure, D. (2018). First report of Dickeya dianthicolacausing blackleg disease on potato plants in Pakistan. Plant Disease , 102, 2027.
Shyntum, D. Y., Nkomo, N. P., Shingange, N. L., Gricia, A. R., Bellieny-Rabelo, D., & Moleleki, L. N. (2019). The Impact of Type VI secretion system, bacteriocins and antibiotics on bacterial competition of Pectobacterium carotovorum subsp. brasiliense and the regulation of carbapenem biosynthesis by iron and the ferric-uptake regulator. Frontiers in Microbiology , 10, 2379. doi: 10.3389/fmicb.2019.02379
Sławiak, M., van Beckhoven, J. R. C. M., Speksnijder, A. G. C. L., Czajkowski, R., Grabe, G., & van der Wolf, J. M. (2009). Biochemical and genetical analysis reveal a new clade of biovar 3 Dickeyaspp. strains isolated from potato in Europe. European Journal of Plant Pathology, 125, 245-261.
Tannières, M., Lang, J., Barnier, C., Shykoff, J. A., & Faure, D. (2017). Quorum-quenching limits quorum-sensing exploitation by signal-negative invaders. Scientific Reports, 7, 40126. doi: 10.1038/srep40126.
Toth, I. K., van der Wolf, J. M., Saddler, G., Lojkowska, E., Hélias, V., Pirhonen, … Elphinstone, J. G. (2011). Dickeya species an emerging problem for potato production in Europe. Plant Pathology , 60, 385-399.
van der Wolf, J. M., Nijhuis, E. H., Kowalewska, M. J., Saddler, G. S., Parkinson, N., Elphinstone, J. G., … Manulis, S. (2014).Dickeya solani sp. nov., a pectinolytic plant-pathogenic bacterium isolated from potato (Solanum tuberosum ).International Journal of Systematic and Evolutionary Microbiology , 64, 768-774.
Wright, D., Bwye, A., Banovic, M., Baulch, J., Wang, C., Hair, S., … Kehoe, M. (2018). First report of Dickeya dianthicola in potatoes in Australia. Plant Disease, 102, 2029.
Zhan, J., & McDonald, B. A. (2013). Experimental measures of pathogen competition and relative fitness. Annual Reviews of Phytopatholog y, 51, 131-153.