REFERENCES
Abdullah, A. S., Moffat, C. S., Lopez-Ruiz, F. J., Gibberd, M. R.,
Hamblin, J., & Zerihun, A. (2017). Host–multi-pathogen warfare:
pathogen interactions in co-infected plants. Frontiers in Plant
Science , 8,1806.
Al-Naimi F. A., Garrett, K. A., & Bockus, W. W. (2005). Competition,
facilitation, and niche differentiation in two foliar pathogens.Oecologia , 143, 449–457.
Bellieny-Rabelo, D., Tanui, C.K., Miguel, N., Kwenda, S., Shyntum, D.Y.,
& Moleleki, L.N. (2019). Transcriptome and comparative genomics
analyses reveal new functional insights on key determinants of
pathogenesis and interbacterial competition in Pectobacterium andDickeya spp. Applied and Environmental Microbiology , 85,
pii:e02050-18.
Burns, J. H., Murphy, J. E., & Zheng, Y. L. (2018). Tests of
alternative evolutionary models are needed to enhance our understanding
of biological invasions. New Phytologist, 222, 701-707.
Cadotte, M. W., Campbell, S. E., Li, S. P., Sodhi, D. S., & Mandrak, N.
E. (2018). Preadaptation and naturalization of nonnative species:
Darwin’s two fundamental insights into species invasion. Annual
Reviews of Plant Biology , 69, 661-684.
Charkowsky, A.O. (2018). The changing face of bacterial soft-rot
diseases. Annual Reviews of Phytopathology, 56, 269-288.
Chen, X. F., Zhang H. L., & Chen, J. (2015). First report ofDickeya solani causing soft-rot in imported bulbs ofHyacinthus orientalis in China. Plant Disease, 99,155.
Crépin, A., Barbey, C., Beury-Cirou, A., Hélias, V., Taupin, L.,
Reverchon, S., … Latour X. (2012). Quorum sensing signaling
molecules produced by reference and emerging soft-rot bacteria
(Dickeya and Pectobacterium spp.). PLoS One , 7,
e35176.
Czajkowski, R., de Boer, W. J., van der Zouwen, P. S., Kastelein, P.,
Jafra, S., de Haan, E.G., … van der Wolf, J. M. (2013). Virulence
of ‘Dickeya solani ’ and Dickeya dianthicolabiovar‐1 and ‐7 strains on potato (Solanum tuberosum ).Plant Pathol ology, 62, 597-610.
Czajkowski, R., de Boer, W. J., Velvis, H., & van der Wolf, J. M.
(2010). Systemic colonization of potato plants by a soilborne, green
fluorescent protein-tagged strain of Dickeya sp. biovar 3.Phytopathology, 100, 134-142.
Duprey, A., Nasser, W., Léonard, S., Brochier‐Armanet, C., & Reverchon,
S. (2016). Transcriptional start site turnover in the evolution of
bacterial paralogous genes – the pelE-pelD virulence genes inDickeya . FEBS Journal, 283, 4192–4207.
Facon, B., Genton, B. J., Shykoff, J., Jarne, P., Estoup, A., & David,
P. (2006). A general eco-evolutionary framework for understanding
bioinvasions. Trends in Ecology & Evolution , 21, 130–135.
Feltner, J. B., Wolter, D. J., Pope, C. E., Groleau, M. C., Smalley, N.,
E., Greenberg, E. P., … Dandekar, A. A. (2016). LasR variant
cystic fibrosis isolates reveal an adaptable quorum-sensing hierarchy inPseudomonas aeruginosa . mBio 7(5): e01513-16.
Francisco, A. P., Vaz, C., Monteiro, P. T., Melo-Cristino, J., Ramirez,
M., & Carriço, J. A. (2012). PHYLOViZ: Phylogenetic inference and data
visualization for sequence based typing methods. BMC
Bioinformatics, 13, 87.
Germain, R. M., Mayfield, M. M., & Gilbert, B. (2018). The ’filtering’
metaphor revisited: competition and environment jointly structure
invasibility and coexistence. Biology Letters, 14, 20180460.
Gladieux, P., Feurtey, A., Hood, M. E., Snirc, A., Clavel, J., Dutech,
C., … Giraud, T. (2015) The population biology of fungal
invasions. Molecular Ecology, 24, 1969-1986.
Golanowska, M., Potrykus, M., Motyka-Pomagruk, A., Kabza, M., Bacci, G.,
Galardini, M., … Lojkowska, E. (2018). Comparison of highly and
weakly virulent Dickeya solani strains, with a view on the
pangenome and panregulon of this species. Frontiers in
Microbiology, 9,1940.
Guidot, A., Jiang, W., Ferdy, J.B., Thébaud, C., Barberis, P., Gouzy,
J., & Genin, S. (2014). Multihost experimental evolution of the
pathogen Ralstonia solanacearum unveils genes involved in
adaptation to plants. Molecular Biology and Evolution , 31,
2913–2928.
Hélias, V., Hamon, P., Huchet, E., Wolf, J. V. D., & Andrivon, D.
(2012). Two new effective semiselective crystal violet pectate media for
isolation of Pectobacterium and Dickeya . Plant
Pathol ogy, 61, 339-345.
Kelley, L. A., Mezulis, S., Yates, C. M., Wass, M. N., & Sternberg, M.
J. E. (2015). The Phyre2 web portal for protein modeling, prediction and
analysis. Nature Protocols, 10, 845–858.
Khayi, S., Blin, P., Pédron, J., Chong, T. M., Chan, K. G., Moumni, M.,
… Faure, D. (2015). Population genomics reveals additive and
replacing horizontal gene transfers in the emerging pathogenDickeya solani . BMC Genomics, 16, 788.
Kinnunen, M., Dechesne, A., Proctor, C., Hammes, F., Johnson, D.,
Quintela-Baluja, M., … Smets BF. (2016). A conceptual framework
for invasion in microbial communities. ISME Journal , 10,
2773-2775.
Kumar, S., Stecher, G., & Tamura, K. (2016). MEGA7: Molecular
evolutionary genetics analysis version 7.0 for bigger dataset.Molecular Biology and Evolution , 33, 1870-1874.
Laurila, J., Ahola, V., Lehtinen, A., Joutsjoki, T., Hannukkala, A.,
Rahkonen, A., & Pirhonen, M. (2008). Characterization of Dickeyastrains isolated from potato and river water samples in Finland.European Journal of Plant Pathology , 122, 213-225.
Léonard, S., Hommais, F., Nasser, W., & Reverchon, S. (2017).
Plant-phytopathogen interactions: bacterial responses to environmental
and plant stimuli. Environmental Microbiology , 19, 1689-1716.
Litchman, E. (2010). Invisible invaders: non-pathogenic invasive
microbes in aquatic and terrestrial ecosystems. Ecology Letters,13, 1560-1572.
MacDougall, A. S., Gilbert, B., & Levine, J. M. (2009). Plant invasions
and the niche. Journal of Ecology, 97, 609-615.
Mallon, C. A., Elsas, J. D. V., & Salles, J. F. (2015). Microbial
invasions: the process, patterns, and mechanisms. Trends in
Microbiology , 23, 719-729.
Nasser, W., Dorel, C., Wawrzyniak, J., Van Gijsegem, F., Groleau, M. C.,
Déziel, E., & Reverchon, S. (2013). Vfm a new quorum sensing system
controls the virulence of Dickeya dadantii. Environmental
Microbiology , 15, 865-880.
Oulghazi, S., Khayi, S., Lafkih, N., Massaoudi Y, El Karkouri A, El
Hassouni M, … Moumni, M. (2017). First report of Dickeya
dianthicola causing blackleg disease on potato in Morocco. Plant
Disease , 101, 1671.
Parkinson, N., Stead, D., Bew, J., Heeney, J., Tsror Lahkim, L., &
Elphinstone, J. (2009). Dickeya species relatedness and clade
structure determined by comparison of recA sequences.International Journal of Systematic and Evolutionary
Microbiology, 59, 2388-2393.
Patel, N., Baldwin, A. C., Patel, R. D., Kobayashi, D. Y., & Wyenandt,
C. A. (2019). First report of Dickeya dianthicola causing
blackleg and soft-rot on potato (Solanum tuberosum ) in New
Jersey, U.S.A. Plant Disease , 103, 146.
Perkins, L. B., Leger, E. A., & Nowak, R. S. (2011). Invasion triangle:
an organizational framework for species invasion. Ecology and
Evolution , 1, 610-625.
Pérombelon, M. C. M. (2002). Potato diseases caused by soft-rot
erwinias: an overview of pathogenesis. Plant Pathology , 51,
1–12.
Potrykus, M., Golanowska, M., Hugouvieux-Cotte-Pattat, N., & Lojkowska,
E. (2014). Regulators involved in Dickeya solani virulence,
genetic conservation and functional variability. Molecular Plant
Microbe Interactions, 27, 700-711.
Potrykus, M., Golanowska, M., Sledz, W., Zoledowska, S., Motyka, A.,
Kolodziejska, A., … Lojkowska, E. (2016). Biodiversity ofDickeya spp. isolated from potato plants and water sources in
temperate climate. Plant Disease, 100, 408-417.
Potrykus, M., Hugouvieux-Cotte-Pattat, N., & Lojkowska, E. (2018).
Interplay of classic
Exp and specific Vfm quorum sensing systems on the phenotypic features
of Dickeya solani strains exhibiting different virulence levels.Molecular Plant Pathology , 19, 1238-1251.
Raoul des Essarts, Y., Cigna, J., Quêtu-Laurent, A., Caron, A., Munier,
E., Beury-Cirou, A., … Faure, D. (2015). Biocontrol of the potato
blackleg and soft rot diseases caused by Dickeya dianthicola .Applied and Environmental Microbiology , 82, 268-278.
Raoul des Essarts, Y., Pédron, J., Blin, P., Van Dijk, E., Faure, D., &
Van Gijsegem, F. (2019). Common and distinctive adaptive traits
expressed in Dickeya dianthicola and Dickeya solanipathogens when exploiting potato plant host. Environmental
Microbiology, 21, 1004-1018.
Reynolds, C.R., Islam, S. A., Sternberg, M. J. E. (2018). EzMol: A Web
Server Wizard for the Rapid Visualization and Image Production of
Protein and Nucleic Acid Structures. Journal of Molecular Biology, 430,
2244–2248.
Sarfraz, S., Riaz, K., Oulghazi, S., Cigna, J., Alam, M. W., Dessaux,
Y., & Faure, D. (2018). First report of Dickeya dianthicolacausing blackleg disease on potato plants in Pakistan. Plant
Disease , 102, 2027.
Shyntum, D. Y., Nkomo, N. P., Shingange, N. L., Gricia, A. R.,
Bellieny-Rabelo, D., & Moleleki, L. N. (2019). The Impact of Type VI
secretion system, bacteriocins and antibiotics on bacterial competition
of Pectobacterium carotovorum subsp. brasiliense and the
regulation of carbapenem biosynthesis by iron and the ferric-uptake
regulator. Frontiers in Microbiology , 10, 2379. doi:
10.3389/fmicb.2019.02379
Sławiak, M., van Beckhoven, J. R. C. M., Speksnijder, A. G. C. L.,
Czajkowski, R., Grabe, G., & van der Wolf, J. M. (2009). Biochemical
and genetical analysis reveal a new clade of biovar 3 Dickeyaspp. strains isolated from potato in Europe. European Journal of
Plant Pathology, 125, 245-261.
Tannières, M., Lang, J., Barnier, C., Shykoff, J. A., & Faure, D.
(2017). Quorum-quenching limits quorum-sensing exploitation by
signal-negative invaders. Scientific Reports, 7, 40126. doi:
10.1038/srep40126.
Toth, I. K., van der Wolf, J. M., Saddler, G., Lojkowska, E., Hélias,
V., Pirhonen, … Elphinstone, J. G. (2011). Dickeya species
an emerging problem for potato production in Europe. Plant
Pathology , 60, 385-399.
van der Wolf, J. M., Nijhuis, E. H., Kowalewska, M. J., Saddler, G. S.,
Parkinson, N., Elphinstone, J. G., … Manulis, S. (2014).Dickeya solani sp. nov., a pectinolytic plant-pathogenic
bacterium isolated from potato (Solanum tuberosum ).International Journal of Systematic and Evolutionary
Microbiology , 64, 768-774.
Wright, D., Bwye, A., Banovic, M., Baulch, J., Wang, C., Hair, S.,
… Kehoe, M. (2018). First report of Dickeya dianthicola in
potatoes in Australia. Plant Disease, 102, 2029.
Zhan, J., & McDonald, B. A. (2013). Experimental measures of pathogen
competition and relative fitness. Annual Reviews of
Phytopatholog y, 51, 131-153.