Clade
|
Name
|
Primer Name
|
Sequence
|
bp
|
Amplicon
Size
(bp)
|
Tm (°C)
|
S |
NS8_
28144_
T to C
|
NS8_1_F |
GTGGATGAGGCTGGTTCTAA |
20 |
217 |
54.6 |
|
|
NS8_1_R |
TGGGGTCCATTATCAGACAT |
20 |
|
53.6 |
V |
NS3_ 26144_G to T |
NS3_3_F |
CTGGTGTTGAACATGTTACCTT |
20 |
209 |
53.2 |
|
|
NS3__3_R |
CTCTTCCGAAACGAATGAGTA |
20 |
|
52 |
G |
Spike_
23403_
A to
G
|
Spike_1_F |
CGTGATCCACAGACACTTGA |
20 |
228 |
54.6 |
|
|
Spike_1_R |
CCCTATTAAACAGCCTGCAC |
20 |
|
53.6 |
GH |
NS3_ 25563_G to T |
NS3_ 2_F |
CAAGGTGAAATCAAGGATGC |
20 |
207 |
51.8 |
|
|
NS3_ 2_R |
CAACAGCAAGTTGCAAACAA |
20 |
|
52.6 |
GR |
N protein 28882_G to A |
N protein_1_F |
AGGAACAACATTGCCAAAAG |
20 |
231 |
51.7 |
|
|
N protein_1 R |
TGTTGGCCTTTACCAGACAT |
20 |
|
54.2 |