Circos plot displaying centromere positions, Tcl-Mariner abundance, density of annotated protein coding genes, male and female Lake Trout (Salvelinus namaycush ) linkage maps and relationships between homeologs resulting from Ss4R. (A) Black boxes in the outside ring display the mean mapping positions (+/- 5 MB) for centromere associated RAD loci from Smith et al. (2020). (B) The second ring displays Z-transformed Tcl-Mariner repeat abundance in 5 megabase sliding windows with an offset of 100 kilobases. (C) The third ring displays the density of annotated genes in 5 megabase sliding windows with an offset of 100 kilobases. The fourth ring displays map distance (centimorgans) for male (red) and female (blue) linkage maps (y-axis) versus physical distance (x-axis) for each of the 42 chromosomes. Connections are drawn between syntenic blocks identified by SyMap v5 putatively resulting from the Salmonid specific autotetraploid event.

XIC. FIGURE 3 – BUSCO SCORES

Comparison of BUSCO scores across multiple chromosome-level salmonid assemblies. Scores for the pre-duplication outgroup species (Northern Pike; Esox lucius ) are also included for comparison. Assemblies are listed top-to-bottom according to the total percentage of complete BUSCOs. Complete single-copy, complete duplicated, fragmented, and missing BUSCO percentages are delineated with green, blue, yellow, and red bars, respectively.