Target Sequence Ref.
Oncorhynchus mykiss (Rainbow trout) Forward: 5ʹ- AGTCTCTCCCTGTATATCGTC -3ʹ Reverse: 5ʹ- GATTTAGTTCATGAAGTTGCGAGAGTA -3ʹ Probe: 5ʹ-[FAM]-CCAACAACTCTTTAACCATC-[NFQ]-[MGB]-3ʹ
The underlined base “A” was modified from (Wilcox et al., 2015)
Plecoglossus altivelis (Sweetfish) Forward: 5ʹ-CCTAGTCTCCCTGGCTTTATTCTCT-3ʹ Reverse: 5ʹ-GTAGAATGGCGTAGGCGAAAA-3ʹ Probe:5ʹ-[FAM]-ACTTCACGGCAGCCAACCCCC-[TAMRA]-3ʹ
(Doi et al., 2017)
Hypophthalmichthys molitrix (Silver carp) Forward: 5ʹ-GCAATTAACTTCATCACCACAACTATTA-3ʹ Reverse: 5ʹ-TCCAGCAGCTAAAACTGGTAAGG-3ʹ Probe:5ʹ-[FAM]-AAACACCTCTCTTTGTTTGAGCTGTGC-[TAMRA]-3ʹ
Farrington et al. (2015)
Trachurus japonicus (Horse mackerel) Forward: 5ʹ-CAGATATCGCAACCGCCTTT-3ʹ Reverse: 5ʹ-CCGATGTGAAGGTAAATGCAAA-3ʹ Probe:5ʹ-[FAM]-TATGCACGCCAACGGCGCCT-[BHQ1]-3ʹ
Yamamoto et al. (2016)