Tool Programming language Motif recognition Motif matching with respect to genomic features Graphical outputs Reference
MeStudio Python, C yes yes yes This study
GenomicRanges R, C No No Yes Bioncoductor package
motifmatchr R, C++ Yes Yes (only providing genomic ranges) Yes Bioncoductor package
Meta-epigenomics https://github.com/hoonjeseong/Meta-epigenomics
Methplotlib Python, Bash No No Yes De Coster et al. (2020)
a-slide/pycoMeth Python, Bash No No Yes Leger. (2020)
NanoMethViz Python, Bash No No Yes Su et al. (2021)