2.1.3. Optimization of protein
We optimized the separated structure by MOE molecular viewer 2013. a
quick receptor optimization was used and probable defects were
discovered and amino acids were localized on active sites of this
protein by stereochemical estimations. Finally, the last structure was
the most stable conformer with least energy level. 10The results of optimization (physicochemical properties, changes in
physiological environments and effects of different parameters) are
described in conclusions with details.