Data accessibility
The grasshopper sequencing data generated here has been deposited on the
sequence read archive (SRA) under numbers SRR18000085-SRR18000130. The
scripts required to process and analyse these data are available from
the GitHub repository
https://github.com/SBCSnicholsLab/pseudogene_quantification which
also contain an R package called ‘vagrantDNA’ to make available the
functions needed to carry out the analysis. The simulation code is
available on GitHub repository
https://github.com/SBCSnicholsLab/vagrantDnaSim .The SRA
identifiers of the human and parrot data used are listed in Supporting
Text S1.